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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3720513_3720595_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3720513 - 3720595
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
SVFAMATRQLVIFLLDFCTL
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.5
36.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.5
0.62
0.8
70.5
36.3
Minor 5ss
36.8
-1.5
3.4
46.6
43.5
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814