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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3720707_3721588_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3720707 - 3721588
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAC
Flanking Amino Acid:
LKNLCSEPHKMEMESWQQEQ
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
76.8
36.1
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
59.8
0.29
2
77.24
38.2

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814