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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3723312_3724487_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3723312 - 3724487
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GAATTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAATT
Flanking Amino Acid:
SRSMALKSLRELGSEADLPP
Intron Amino Acid Position:
1216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.7
0.6
0.9
70
40.8
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
64.6
0.54
1.4
75.93
41.4

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814