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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3726803_3728084_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3726803 - 3728084
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGTCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
SLADSIRIWMLEMKQKSLMA
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
38.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.4
0.57
0.9
68.1
37.6
Minor 5ss
38.4
-1.3
3
45.8
43.3
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814