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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3729240_3729909_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3729240 - 3729909
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCCTCATTCATT
Flanking Amino Acid:
FIKDQSLSHESVLKVLALRK
Intron Amino Acid Position:
1548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
81.2
0.7
0.8
76.8
32
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
52.7
0.17
2
72.41
45

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814