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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3730785_3731605_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3730785 - 3731605
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGCA
5'SS Class:
major
3'SS Sequence:
TTTTGGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AACATGCTATTT
Flanking Amino Acid:
SVKGFSTINDRSLLPALSCV
Intron Amino Acid Position:
1643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
63.8
34.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
83.1
0.74
0.8
81.2
36.5
Minor 5ss
36.2
-1.6
3.4
48.1
47.6
Minor BPS
35.9
-0.9
2.2
48.17
38.8

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814