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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3731768_3732424_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3731768 - 3732424
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCAAACTTAATT
Flanking Amino Acid:
ENISIHDSVICQWSEEDEIA
Intron Amino Acid Position:
1697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.9
0.74
0.7
81.2
30.9
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
63.2
0.49
1.6
74.74
41.9

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814