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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3732555_3732808_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3732555 - 3732808
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCTCA
5'SS Class:
major
3'SS Sequence:
TGTATTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TAATGCTCAAGT
Flanking Amino Acid:
AQADPEKQRKMHMFVARYCD
Intron Amino Acid Position:
1741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
64.6
38
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
75.3
0.57
0.9
67
40.4
Minor 5ss
44.2
-0.6
2.8
56.9
47.3
Minor BPS
48.5
-0
2.2
70.45
45.9

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814