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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3733320_3733915_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3733320 - 3733915
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ACCTTCTTACCT
Flanking Amino Acid:
GCYSAKKYSDSHLPTHSITV
Intron Amino Acid Position:
1842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
61.8
0.45
1.6
73.16
44.2

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814