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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3735364_3736672_F

Intron Information:

Intron Rank:
39
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3735364 - 3736672
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACCCATT
5'SS Class:
weak_major
3'SS Sequence:
TTAATTTAAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTGCTTTAATT
Flanking Amino Acid:
SVGSYMHCNVTDDCTSEDSA
Intron Amino Acid Position:
1989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
66.6
44.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
58.7
0.2
1.2
61.3
42.7
Minor 5ss
55.3
0.18
2.8
74.7
35.2
Minor BPS
80.1
1.02
1.2
91.31
32.6

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006844
3697619 - 3754432
56814