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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3737646_3738739_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3737646 - 3738739
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTTA
5'SS Class:
major
3'SS Sequence:
TCTTGCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCCCTCCTAATA
Flanking Amino Acid:
LFSLGAVCLDSRVGLDWASS
Intron Amino Acid Position:
2128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
73.2
33.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
85.2
0.79
0.8
76.7
37.4
Minor 5ss
37.3
-1.4
3.1
49.6
46.6
Minor BPS
48
-0.1
1.7
53.52
39.1

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814