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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3738915_3739460_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3738915 - 3739460
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTACAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTGTTACAATT
Flanking Amino Acid:
TLLVLVGFPEVLCMGTRSVY
Intron Amino Acid Position:
2187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
72.5
0.51
1
67.5
42.5
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
48.4
-0
1.8
72.15
39.6

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814