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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3739594_3741277_F

Intron Information:

Intron Rank:
43
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3739594 - 3741277
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTGTGA
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ACCTAATGAATT
Flanking Amino Acid:
VDIKTRKRKTVKDYQLIQKC
Intron Amino Acid Position:
2231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.3
51.7
41.6
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
84.3
0.77
0.7
80.5
24.8
Minor 5ss
31.5
-2.1
3.2
39.9
45.5
Minor BPS
46.4
-0.1
1.8
61.42
42.3

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006844
3697619 - 3754432
56814
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814