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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3741475_3742009_F

Intron Information:

Intron Rank:
44
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3741475 - 3742009
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
ATTGTGATAAGT
Flanking Amino Acid:
ALKGLYRTLKIHGFKEVQAA
Intron Amino Acid Position:
2297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
74.9
0.56
1
69.4
40.7
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
42.5
-0.4
2.5
66.26
44.6

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814