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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3743630_3744163_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3743630 - 3744163
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CTTTTTTTTAAG
Flanking Amino Acid:
TDSFFLEVQKRFDGDVITTD
Intron Amino Acid Position:
2433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.4
28.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84.6
0.78
0.9
90.3
22.8
Minor 5ss
32.6
-2
3.1
39.4
46.5
Minor BPS
49.8
-0.1
1.8
59.36
42.7

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814