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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3744300_3745403_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3744300 - 3745403
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTATG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATATTCAAACT
Flanking Amino Acid:
DTDMIILPCLSKPVLCDKAT
Intron Amino Acid Position:
2479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
0.9
72.3
38.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
40.1
-1.1
2.7
47.3
42.8
Minor BPS
47.6
-0.1
2
70
40.9

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814