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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3753252_3753780_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3753252 - 3753780
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTGTGGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATTGAAT
Flanking Amino Acid:
LFFVTENRVTELGSLQEYLL
Intron Amino Acid Position:
2844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.2
66
45.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.2
0.59
1
69.6
41.6
Minor 5ss
44
-0.6
3
67.7
43
Minor BPS
57
0.3
1.8
74.58
41.8

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814