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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3753853_3754357_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3753853 - 3754357
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGTGACGTGACT
Flanking Amino Acid:
EDHLHRCTAQALKNIAAISL
Intron Amino Acid Position:
2868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
84.1
0.77
0.7
77.3
31.4
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
47.9
-0
2.3
72.88
44

Associated Gene:

Gene:
ZZEF1
Ensembl Gene ID:
ENSAPLG00000006501
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046130
3697619 - 3754432
56814
ENSAPLT00000040422
3697619 - 3754432
56814
ENSAPLT00000006844
3697619 - 3754432
56814