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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3765920_3769223_F

Intron Information:

Intron Rank:
128009
Intron Class:
major
Intron Phase:
Intron Coordinates:
3765920 - 3769223
Intron Length:
3304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018986
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038469
3765779 - 3770513
4735