Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3777670_3790744_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3777670 - 3790744

Intron Length:

13075

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TGGAAACCCCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATGGAT

U12 Branch Point Sequence:

TGGATGGAAACC

Flanking Amino Acid:

RRSREKYGPNELPAEEGKSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

63.6

0.34

1.4

63.4

44.3

Major PPT

56.2

0.14

44.3

42.2

Minor 5ss

-2.2

3.2

41.8

Minor BPS

35.7

-1.1

2.5

46.59

42.8

Associated Gene:

Gene:

ATP2A3

Ensembl Gene ID:

ENSAPLG00000004337

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023557

3777552 - 3820502

42951

ENSAPLT00000004631

3777552 - 3819446

41895