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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_379230_379989_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
379230 - 379989
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TGTCCCTAAAAA
Flanking Amino Acid:
WFNKVLEDKADSTGAVIGSQ
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
84.6
0.78
0.7
76.5
32.1
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
59.2
0.29
1.8
71.33
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008056
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048218
375662 - 386759
11098