About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_379718_379989_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
379718 - 379989
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GGATACTGACTT
Flanking Amino Acid:
WFNKVLEDKADPVPSTTAET
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
71.5
0.48
0.9
69.6
31.2
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
45.8
-0.2
1.9
60.74
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008056
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008391
374662 - 386759
12098