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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3814103_3815963_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3814103 - 3815963
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
GTTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTACCA
Flanking Amino Acid:
LKYLSRNHLDGILRTVRNTW
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60
46.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.9
78
40.1
Minor 5ss
33.8
-1.8
2.9
40.5
45.4
Minor BPS
65.7
0.49
1.6
75.16
36.6

Associated Gene:

Gene:
ATP2A3
Ensembl Gene ID:
ENSAPLG00000004337
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023557
3777552 - 3820502
42951