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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3827783_3830274_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3827783 - 3830274
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CTTCCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CACCCCTCACCT
Flanking Amino Acid:
IQLIVLAYIIGWVFLYEKGY
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
80.6
0.69
0.7
72.7
32.1
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
48
-0
1.9
62.78
46.8

Associated Gene:

Gene:
P2RX1
Ensembl Gene ID:
ENSAPLG00000004249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004361
3827646 - 3836034
8389