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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3830423_3830888_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3830423 - 3830888
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
TGTGTCTCCACA
Flanking Amino Acid:
DVVDYVFPPQGDNSFVVMTN
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
75.5
0.57
0.9
69
37.2
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
47.7
-0.1
2.1
63.67
42.8

Associated Gene:

Gene:
P2RX1
Ensembl Gene ID:
ENSAPLG00000004249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004361
3827646 - 3836034
8389