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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3830961_3831234_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3830961 - 3831234
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TTTCCCCAAACA
Flanking Amino Acid:
PGQKQGTCPELPDAGSCTRD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
71.3
0.48
0.9
67
33
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
58.8
0.27
2
77.88
38.5

Associated Gene:

Gene:
P2RX1
Ensembl Gene ID:
ENSAPLG00000004249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004361
3827646 - 3836034
8389