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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3834031_3834345_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3834031 - 3834345
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGCA
5'SS Class:
major
3'SS Sequence:
TCTCATGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AAGCCATTAACG
Flanking Amino Acid:
DSNVSPGFNFRYAKYYKEDG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.2
34.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
65.9
0.36
1
59.9
40.2
Minor 5ss
23.4
-3.1
3.3
29.7
43.3
Minor BPS
55.9
0.05
1.7
58.3
42.5

Associated Gene:

Gene:
P2RX1
Ensembl Gene ID:
ENSAPLG00000004249
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004361
3827646 - 3836034
8389