Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3861691_3867633_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

3861691 - 3867633

Intron Length:

5943

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

CCCTGGCAACCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TGTTCTTTGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

80.9

25.7

Major BPS

0.85

0.9

39.9

Major PPT

55.9

0.13

47.1

39.5

Minor 5ss

27.5

-2.6

33.8

42.3

Minor BPS

77.8

0.96

87.51

31.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027818

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017536

3861405 - 3888965

27561