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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_390493_390678_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
390493 - 390678
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAA
U12 Branch Point Sequence:
CGGCCCCCAAGG
Flanking Amino Acid:
KSGKSQIEEKDSMDFSSMTL
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
45.3
-0.2
1.2
50
35.2
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
39
-0.9
2
38.62
43.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384