Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_390803_390993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

390803 - 390993

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

TCGGCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAGCAC

U12 Branch Point Sequence:

TGGGACATAAGC

Flanking Amino Acid:

STAQLVAASKVKADKDSANL

Intron Amino Acid Position:

940

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

48.2

-0.1

1.4

57.7

Major PPT

60.2

0.23

54.6

36.5

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

43.2

-0.5

2.1

52.91

44.2

Associated Gene:

Gene:

HIP1

Ensembl Gene ID:

ENSAPLG00000008219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037426

389232 - 417762

28531

ENSAPLT00000030367

389232 - 417762

28531

ENSAPLT00000026970

389232 - 417762

28531

ENSAPLT00000008712

389232 - 437615

48384