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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_391100_391224_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
391100 - 391224
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTCCTCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGGGAT
U12 Branch Point Sequence:
GATGCTCTAGCC
Flanking Amino Acid:
KAVGWGATVMVDAADLVVQG
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
64.4
41.2
Major BPS
42.4
-0.4
1.5
34.8
43.8
Major PPT
78.5
0.64
0.8
73
31.8
Minor 5ss
35
-1.7
3.3
44.4
43.5
Minor BPS
46
-0.3
1.9
57.05
41.4

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531