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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_391326_391701_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
391326 - 391701
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TGCTCCAGCATG
Flanking Amino Acid:
LQREIVESGRGAASPKEFYA
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
32.9
-2
2.8
31.4
42.5
Minor BPS
42.7
-0.7
2.1
49.84
44.1

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531