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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3916257_3919566_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3916257 - 3919566
Intron Length:
3310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
GGGTGCTTAAGG
Flanking Amino Acid:
ETRITVPEIKFVGNQLGGWS
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
72.7
0.51
1
68.8
37.1
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
48.1
-0.2
2.1
52.59
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028279
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023533
3913939 - 3919713
5775