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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_392082_392230_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
392082 - 392230
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACCGG
5'SS Class:
major
3'SS Sequence:
TCCCCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAA
U12 Branch Point Sequence:
TCCCCTCTGACA
Flanking Amino Acid:
AIETAATRIEEMLSKARAGD
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
53
45.7
Major BPS
52.8
0.07
1.3
57.3
41.7
Major PPT
71.7
0.49
0.9
67.6
32.4
Minor 5ss
31.2
-2.2
3.1
38.6
46.5
Minor BPS
49.6
-0
1.7
60.28
39.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531