About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_392342_392466_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
392342 - 392466
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGGCAT
U12 Branch Point Sequence:
CCTCCCTTAGGC
Flanking Amino Acid:
CLGQISAIGEELRPRGLDVE
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
52.1
0.05
1.5
63.4
44.3
Major PPT
72
0.5
0.9
68.7
37.2
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
49.5
-0
1.9
59.36
45.7

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531