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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_392801_393005_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
392801 - 393005
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAG
U12 Branch Point Sequence:
TTCAGCTGAGCT
Flanking Amino Acid:
AHRKYLSNHTDVSSLLPCVA
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
48.3
-0.1
1.7
59.3
47.1
Major PPT
77.8
0.63
0.8
72.5
32.2
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
47
-0.1
2.1
69.65
46.7

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531