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Intron Name: Anas_platyrhynchos_platyrhynchos_20_393856_395440_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

393856 - 395440

Intron Length:

1585

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGTC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCCCGGCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

ACAGTCTTGATG

Flanking Amino Acid:

LQGTLESSTQVGAEQSTRIA

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.8

78.5

28.9

Major BPS

83.8

0.84

73.6

41.8

Major PPT

58.5

0.19

1.1

50.8

43.9

Minor 5ss

29.5

-2.3

3.4

40.8

45.7

Minor BPS

49.2

-0.2

1.4

48.04

40.1

Associated Gene:

Gene:

HIP1

Ensembl Gene ID:

ENSAPLG00000008219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037426

389232 - 417762

28531

ENSAPLT00000030367

389232 - 417762

28531

ENSAPLT00000008712

389232 - 437615

48384