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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_393856_395707_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
393856 - 395707
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ACAGTCTTGATG
Flanking Amino Acid:
QRVSEQAQRKVGAEQSTRIA
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
58.5
0.19
1.1
50.8
43.9
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
49.2
-0.2
1.4
48.04
40.1

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026970
389232 - 417762
28531