Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3939668_3941552_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3939668 - 3941552

Intron Length:

1885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

ATATATTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GTATTCTAAAGA

Flanking Amino Acid:

GGRLLRTPSVLKAIFDTPED

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

79.1

0.66

0.9

70.1

44.7

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

51.3

0.04

64.26

42.1

Associated Gene:

Gene:

DERL2

Ensembl Gene ID:

ENSAPLG00000003988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004077

3938095 - 3941658

3564