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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3944157_3944864_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3944157 - 3944864
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
GTTGCTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCGTATTTATGC
Flanking Amino Acid:
DEKRTELGKLVGYTVRFDDL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
63.5
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.2
0.5
0.8
70
36.5
Minor 5ss
27.3
-2.6
3.2
31.8
37.6
Minor BPS
45.4
-0.3
2
54.3
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019777
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031727
3943279 - 3945155
1877