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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3947053_3947702_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3947053 - 3947702
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGGCTTTTGACT
Flanking Amino Acid:
QLRVFQAAPKGCRKVILSTN
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.3
0.79
0.6
81.3
23.7
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
61.5
0.44
1.2
72.48
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015593
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016268
3946927 - 3955871
8945