Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3947815_3948178_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3947815 - 3948178

Intron Length:

364

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCACACTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TTTTCCACACTC

Flanking Amino Acid:

GMVKAKKYNPEIGLEVLAVQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.8

78.2

31.2

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

73.3

0.52

0.9

70.9

33.9

Minor 5ss

27.1

-2.6

42.4

Minor BPS

49.9

-0

2.1

71.62

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015593

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016268

3946927 - 3955871

8945