About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3948339_3949101_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3948339 - 3949101
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
ACTGAGATAATC
Flanking Amino Acid:
FDKMTVPEIQRCNLASVMLQ
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
75.7
0.58
0.9
69.9
36.5
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
39.9
-0.7
2.3
50.14
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015593
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016268
3946927 - 3955871
8945