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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_395825_395898_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
395825 - 395898
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCCCC
5'SS Class:
major
3'SS Sequence:
CTGCTATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCTAT
U12 Branch Point Sequence:
GGCCCCTGAGCT
Flanking Amino Acid:
VQNHADLLRKNADVTKQVTV
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
56.7
42.7
Major BPS
48.5
-0
1.4
47.8
45.7
Major PPT
70.8
0.47
0.9
62
38.9
Minor 5ss
32.3
-2
3.2
42.1
44.9
Minor BPS
49.2
0.02
1.8
64.56
44.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531