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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_395988_396063_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
395988 - 396063
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
CTGTGTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCACCTCACCC
Flanking Amino Acid:
KAQRSLTEIERRAQANEQRY
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.3
74.1
38.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
65.3
0.34
1.1
60.9
44.7
Minor 5ss
31
-2.2
2.6
32.5
35
Minor BPS
48.3
-0.1
1.9
59.11
45.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384