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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3960573_3964693_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3960573 - 3964693
Intron Length:
4121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGGGCCAA
5'SS Class:
weak_major
3'SS Sequence:
CTCCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTCCCTGTGCT
Flanking Amino Acid:
VQVHSLGLAPRCAERLRSGR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
46.1
39.8
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
32.5
-2
3.3
42.9
45.4
Minor BPS
37
-0.9
3.6
62.16
47.3

Associated Gene:

Gene:
RPAIN
Ensembl Gene ID:
ENSAPLG00000012721
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013237
3957221 - 3964786
7566