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Intron Name: Anas_platyrhynchos_platyrhynchos_20_396248_396652_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

396248 - 396652

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGAC

5'SS Class:

strong_major

3'SS Sequence:

GCTGTATCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGTAT

U12 Branch Point Sequence:

CCTGCTGTATCT

Flanking Amino Acid:

KEELESFKAENERRTLQLRG

Intron Amino Acid Position:

394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

71.9

33.8

Major BPS

46.5

-0.2

1.5

45.3

47.5

Major PPT

73.6

0.53

0.9

66.1

39.8

Minor 5ss

26.1

-2.7

3.2

33.4

42.6

Minor BPS

44.5

-0.3

2.3

62.39

48.2

Associated Gene:

Gene:

HIP1

Ensembl Gene ID:

ENSAPLG00000008219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037426

389232 - 417762

28531

ENSAPLT00000030367

389232 - 417762

28531

ENSAPLT00000026970

389232 - 417762

28531

ENSAPLT00000008712

389232 - 437615

48384