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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3963845_3964010_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3963845 - 3964010
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
CCTGCATGAACA
Flanking Amino Acid:
IVLLTSDNTIRIYSLKIPQT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
84.3
0.77
0.7
77.9
31
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
49.3
-0
1.9
61.11
44.8

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691