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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3964098_3964637_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3964098 - 3964637
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
GACCTGTCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTCTGACCT
Flanking Amino Acid:
SEEETLTINKGRAYTASLGE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.2
60.9
43.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
59.8
0.22
0.9
50.3
39
Minor 5ss
38.3
-1.3
3
41.9
44.8
Minor BPS
60.9
0.42
1.8
80.19
41.9

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691