About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3964815_3965115_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3964815 - 3965115
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTC
Flanking Amino Acid:
TFLTYISLIQSTGNLGKLLG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
46.1
-0.4
3.2
63.6
48.1
Minor BPS
66.8
0.51
1.5
73.5
38.4

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691